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Structure of Hen egg white lysozyme soaked with Ni-cyclam
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 Acetate buffer, NaCl, pH 4.5, VAPOR DIFFUSION, temperature 277K, VAPOR DIFFUSION, HANGING DROP, temperature 277.0K
Crystal Properties Matthews coefficient Solvent content 1.98 37.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.324 α = 90 b = 77.324 β = 90 c = 37.948 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 1.488 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 54.64 100 11516
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.75 54.64 12132 11516 578 99.96 0.181 0.18378 0.18089 0.1786 0.24591 0.2412 RANDOM 20.845
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.21 -0.21 0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.66 r_dihedral_angle_4_deg 21.854 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 6.383 r_scangle_it 4.14 r_scbond_it 2.736 r_angle_refined_deg 1.881 r_mcangle_it 1.802 r_mcbond_it 1.08 r_nbtor_refined 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.66 r_dihedral_angle_4_deg 21.854 r_dihedral_angle_3_deg 14.717 r_dihedral_angle_1_deg 6.383 r_scangle_it 4.14 r_scbond_it 2.736 r_angle_refined_deg 1.881 r_mcangle_it 1.802 r_mcbond_it 1.08 r_nbtor_refined 0.294 r_nbd_refined 0.233 r_symmetry_hbond_refined 0.191 r_xyhbond_nbd_refined 0.187 r_symmetry_vdw_refined 0.168 r_chiral_restr 0.12 r_metal_ion_refined 0.076 r_bond_refined_d 0.019 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1028 Nucleic Acid Atoms Solvent Atoms 175 Heterogen Atoms 33
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction MOLREP phasing