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Crystal structure of human TR alpha bound T3 in monoclinic space group
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 298 1.0 M sodium cacodylate and 0.1M sodium acetate threehydrate, pH 7.2, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 4.33 71.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 117.569 α = 90 b = 80.626 β = 121.09 c = 62.614 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate Mirrors 2004-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.33 62.994 86 0.086 0.086 7.7 1.8 18468 18468 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.33 2.46 90 0.383 0.383 2 1.7 2807
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.33 32.22 18468 18467 942 85.9 0.19 0.19 0.187 0.238 RANDOM 51.043
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 -0.03 -0.04
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_3_deg 19.904 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_1_deg 7.528 r_scangle_it 4.934 r_scbond_it 3.347 r_angle_refined_deg 2.617 r_mcangle_it 2.066 r_mcbond_it 1.264 r_symmetry_hbond_refined 0.372
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.016 r_dihedral_angle_3_deg 19.904 r_dihedral_angle_4_deg 18.924 r_dihedral_angle_1_deg 7.528 r_scangle_it 4.934 r_scbond_it 3.347 r_angle_refined_deg 2.617 r_mcangle_it 2.066 r_mcbond_it 1.264 r_symmetry_hbond_refined 0.372 r_nbtor_refined 0.296 r_xyhbond_nbd_refined 0.246 r_nbd_refined 0.224 r_symmetry_vdw_refined 0.22 r_chiral_restr 0.154 r_bond_refined_d 0.027 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2047 Nucleic Acid Atoms Solvent Atoms 70 Heterogen Atoms 23
Software Software Software Name Purpose SCALA data scaling MOLREP phasing REFMAC refinement PDB_EXTRACT data extraction MAR345 data collection CCP4 data scaling