X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1LC01LC0.pdb

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP5.5277MgCl2, Bis-Tris, PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3547.75

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.787α = 90
b = 92.747β = 90
c = 147.755γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 225 mm CCD2006-03-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSLS BEAMLINE X10SA0.9789SLSX10SA

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.741.396.833769
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.72.8592.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1LC0.pdb2.7503232432324139996.420.239430.239430.237350.28691RANDOM57.219
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.223.73-3.95
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.486
r_dihedral_angle_3_deg17.771
r_dihedral_angle_4_deg14.491
r_dihedral_angle_1_deg5.664
r_scangle_it2.044
r_angle_refined_deg1.514
r_scbond_it1.265
r_angle_other_deg0.954
r_mcangle_it0.773
r_mcbond_it0.438
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.486
r_dihedral_angle_3_deg17.771
r_dihedral_angle_4_deg14.491
r_dihedral_angle_1_deg5.664
r_scangle_it2.044
r_angle_refined_deg1.514
r_scbond_it1.265
r_angle_other_deg0.954
r_mcangle_it0.773
r_mcbond_it0.438
r_nbd_refined0.242
r_symmetry_vdw_refined0.196
r_nbtor_refined0.195
r_nbd_other0.192
r_symmetry_vdw_other0.185
r_xyhbond_nbd_refined0.148
r_mcbond_other0.121
r_nbtor_other0.09
r_chiral_restr0.081
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8453
Nucleic Acid Atoms
Solvent Atoms23
Heterogen Atoms192

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
CCP4data scaling
PHASERphasing