☰ Navigation Tabs
Crystal Structure of Human Biliverdin Reductase A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1LC0 1LC0.pdb
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 277 MgCl2, Bis-Tris, PEG 3350, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.35 47.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.787 α = 90 b = 92.747 β = 90 c = 147.755 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2006-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.9789 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 41.3 96.8 33769
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.7 2.85 92.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1LC0.pdb 2.7 50 32324 32324 1399 96.42 0.23943 0.23943 0.23735 0.2815 0.28691 0.3239 RANDOM 57.219
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.22 3.73 -3.95
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.486 r_dihedral_angle_3_deg 17.771 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_1_deg 5.664 r_scangle_it 2.044 r_angle_refined_deg 1.514 r_scbond_it 1.265 r_angle_other_deg 0.954 r_mcangle_it 0.773 r_mcbond_it 0.438
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.486 r_dihedral_angle_3_deg 17.771 r_dihedral_angle_4_deg 14.491 r_dihedral_angle_1_deg 5.664 r_scangle_it 2.044 r_angle_refined_deg 1.514 r_scbond_it 1.265 r_angle_other_deg 0.954 r_mcangle_it 0.773 r_mcbond_it 0.438 r_nbd_refined 0.242 r_symmetry_vdw_refined 0.196 r_nbtor_refined 0.195 r_nbd_other 0.192 r_symmetry_vdw_other 0.185 r_xyhbond_nbd_refined 0.148 r_mcbond_other 0.121 r_nbtor_other 0.09 r_chiral_restr 0.081 r_bond_refined_d 0.014 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8453 Nucleic Acid Atoms Solvent Atoms 23 Heterogen Atoms 192
Software Software Software Name Purpose REFMAC refinement MAR345 data collection CCP4 data scaling PHASER phasing