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1.5 A Crystal Structure of a Protein of Unknown Function ATU1052 from Agrobacterium tumefaciens
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 298 0.2M NH4 Formate, 12% PEG3350, 4%MPD, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.25 45.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.987 α = 90 b = 108.65 β = 93.74 c = 80.955 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-12-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 80.85 96.92 0.051 17.07 2.3 123031 119242 2 2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.538 71.07 0.231 2.1 1.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.5 24.13 123031 119242 6320 96.92 0.15368 0.15212 0.1527 0.18343 0.1835 RANDOM 14.355
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.78 0.11 0.79
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.936 r_dihedral_angle_4_deg 16.575 r_dihedral_angle_3_deg 12.059 r_dihedral_angle_1_deg 4.933 r_sphericity_free 3.409 r_scangle_it 2.794 r_scbond_it 2.02 r_sphericity_bonded 1.303 r_mcangle_it 1.282 r_angle_refined_deg 1.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.936 r_dihedral_angle_4_deg 16.575 r_dihedral_angle_3_deg 12.059 r_dihedral_angle_1_deg 4.933 r_sphericity_free 3.409 r_scangle_it 2.794 r_scbond_it 2.02 r_sphericity_bonded 1.303 r_mcangle_it 1.282 r_angle_refined_deg 1.211 r_rigid_bond_restr 1.199 r_mcbond_it 1.085 r_angle_other_deg 0.805 r_symmetry_vdw_other 0.298 r_mcbond_other 0.269 r_nbd_refined 0.221 r_nbd_other 0.187 r_nbtor_refined 0.181 r_symmetry_vdw_refined 0.177 r_xyhbond_nbd_other 0.146 r_symmetry_hbond_refined 0.146 r_xyhbond_nbd_refined 0.145 r_nbtor_other 0.078 r_chiral_restr 0.066 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6193 Nucleic Acid Atoms Solvent Atoms 1229 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing SHELXE model building SOLVE phasing RESOLVE phasing ARP/wARP model building