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Crystal Structure of Mus musculus Acetylcholinesterase in Complex with Obidoxime
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06 PDB ENTRY 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.1 278 26-30 % PEG750MME, 0.1 M HEPES, pH 7.1, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 4.19 70.64
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 79.06 α = 90 b = 111.53 β = 90 c = 227.36 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2006-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I911-5 1.07962 MAX II I911-5
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 29.67 99.9 0.088 16.8 7.4 79454
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.4 2.53 100 0.554 4.4 7.5 11478
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J06 2.4 29.67 79374 1568 100 0.197 0.197 0.196 0.1909 0.232 0.2229 RANDOM 43.651
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.26 0.33 -0.59
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.922 r_dihedral_angle_4_deg 19.549 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 6.385 r_scangle_it 2.87 r_scbond_it 1.761 r_angle_refined_deg 1.444 r_mcangle_it 1.085 r_mcbond_it 0.634 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.922 r_dihedral_angle_4_deg 19.549 r_dihedral_angle_3_deg 17.142 r_dihedral_angle_1_deg 6.385 r_scangle_it 2.87 r_scbond_it 1.761 r_angle_refined_deg 1.444 r_mcangle_it 1.085 r_mcbond_it 0.634 r_nbtor_refined 0.309 r_symmetry_hbond_refined 0.277 r_nbd_refined 0.209 r_symmetry_vdw_refined 0.161 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.099 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8336 Nucleic Acid Atoms Solvent Atoms 368 Heterogen Atoms 121
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data scaling