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Crystal structure of Mus musculus Acetylcholinesterase in complex with Ortho-7
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1J06 PDB ENTRY 1J06
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 278 26-30 % PEG750MME, 0.1 M HEPES, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 278K
Crystal Properties Matthews coefficient Solvent content 3.84 67.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.73 α = 90 b = 108.58 β = 90 c = 220.58 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MAR scanner 345 mm plate 2006-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX II BEAMLINE I711 1.131 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 29 99.4 0.086 19.6 7.5 64151
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 99.1 0.507 4.8 7.5 9236
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1J06 2.5 29 64111 1276 99.26 0.198 0.198 0.197 0.1882 0.241 0.2279 RANDOM 41.323
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.629 r_dihedral_angle_4_deg 20.101 r_dihedral_angle_3_deg 18.34 r_dihedral_angle_1_deg 6.539 r_scangle_it 2.915 r_scbond_it 1.754 r_angle_refined_deg 1.545 r_mcangle_it 1.114 r_mcbond_it 0.626 r_nbtor_refined 0.334
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.629 r_dihedral_angle_4_deg 20.101 r_dihedral_angle_3_deg 18.34 r_dihedral_angle_1_deg 6.539 r_scangle_it 2.915 r_scbond_it 1.754 r_angle_refined_deg 1.545 r_mcangle_it 1.114 r_mcbond_it 0.626 r_nbtor_refined 0.334 r_symmetry_hbond_refined 0.246 r_nbd_refined 0.243 r_symmetry_vdw_refined 0.229 r_xyhbond_nbd_refined 0.166 r_chiral_restr 0.094 r_bond_refined_d 0.014 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8336 Nucleic Acid Atoms Solvent Atoms 343 Heterogen Atoms 92
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data scaling