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X-ray structure of influenza virus NS1 effector domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.8 298 200 mM NaSCN, 100 mM Hepes pH 6.8, 16% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 3.96 68.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59 α = 90 b = 59 β = 90 c = 268.022 γ = 90
Symmetry Space Group P 43 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD ADSC QUANTUM 315 2005-12-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97909 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 28692
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 20 28692 1432 99.48 0.207 0.207 0.206 0.223 0.2453 RANDOM 39.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.18 1.18 -2.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.642 r_dihedral_angle_4_deg 17.12 r_dihedral_angle_3_deg 13.156 r_dihedral_angle_1_deg 6.045 r_scangle_it 4.326 r_scbond_it 2.635 r_angle_refined_deg 1.654 r_mcangle_it 1.614 r_mcbond_it 0.829 r_symmetry_hbond_refined 0.333
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.642 r_dihedral_angle_4_deg 17.12 r_dihedral_angle_3_deg 13.156 r_dihedral_angle_1_deg 6.045 r_scangle_it 4.326 r_scbond_it 2.635 r_angle_refined_deg 1.654 r_mcangle_it 1.614 r_mcbond_it 0.829 r_symmetry_hbond_refined 0.333 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.241 r_nbd_refined 0.233 r_xyhbond_nbd_refined 0.19 r_chiral_restr 0.077 r_bond_refined_d 0.017 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1950 Nucleic Acid Atoms Solvent Atoms 270 Heterogen Atoms 9
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling SHELX phasing DM phasing REFMAC refinement PDB_EXTRACT data extraction SHELXD phasing