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SpvB ADP-ribosylated actin: hexagonal crystal form
Crystallization Crystal Properties Matthews coefficient Solvent content 3.15 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.361 α = 90 b = 96.361 β = 90 c = 97.41 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2004-10-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.979 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 99 100 0.051 14.4 7.3 57844
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 100 0.728 5.6 5708
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 83.33 39922 2041 95.92 0.153 0.153 0.152 0.1645 0.184 0.1682 RANDOM 23.119
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.82 0.41 0.82 -1.22
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_3_deg 15.159 r_dihedral_angle_1_deg 5.772 r_scangle_it 4.963 r_scbond_it 3.386 r_angle_refined_deg 1.869 r_mcangle_it 1.846 r_angle_other_deg 1.279 r_mcbond_it 1.269
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32 r_dihedral_angle_4_deg 17.059 r_dihedral_angle_3_deg 15.159 r_dihedral_angle_1_deg 5.772 r_scangle_it 4.963 r_scbond_it 3.386 r_angle_refined_deg 1.869 r_mcangle_it 1.846 r_angle_other_deg 1.279 r_mcbond_it 1.269 r_mcbond_other 0.363 r_symmetry_vdw_other 0.31 r_nbd_refined 0.249 r_symmetry_hbond_refined 0.228 r_xyhbond_nbd_refined 0.218 r_nbd_other 0.212 r_symmetry_vdw_refined 0.188 r_nbtor_refined 0.183 r_chiral_restr 0.142 r_nbtor_other 0.093 r_metal_ion_refined 0.081 r_bond_refined_d 0.02 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2821 Nucleic Acid Atoms Solvent Atoms 417 Heterogen Atoms 32
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement PDB_EXTRACT data extraction