2GWE

Crystal structure of D(G4T4G4) with six quadruplexes in the asymmetric unit.

X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	1JRN	THE FIRST QUADRUPLEX OF NDB ENTRY CODE UD0014 OR PDB ENTRY CODE 1JRN WITH NOTHING ELSE.

Crystallization

Crystalization Experiments
ID	Method	pH	Temperature	Details
1		7	285	MAGNESIUM CHLORIDE, POTASSIUM CHLORIDE, SPERMINE TETRAHYDROCHLORIDE, DNA, BR-ACO-19, MPD, POTASSIUM CACODYLATE BUFFER, VAPOR DIFFUSION, HANGING DROP, temperature 285K, pH 7.00

Crystal Properties
Matthews coefficient	Solvent content
1.93	36.3

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 47.645	α = 90
b = 78.881	β = 90
c = 97.011	γ = 90

Symmetry
Space Group	P 21 21 21

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	CCD	ADSC QUANTUM 210	A CYLINDRICAL GRAZING INCIDENCE MIRROR	2003-04-28	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID29		ESRF	ID29

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.2	17	97.5	0.075	15.46	4.95		18290		-2

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2.2	2.28	95.9		0.263	5.4

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Starting model	Resolution (High)	Resolution (Low)	Cut-off Sigma (F)	Number Reflections (All)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Factor (Observed)	R-Work	R-Free	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	THE FIRST QUADRUPLEX OF NDB ENTRY CODE UD0014 OR PDB ENTRY CODE 1JRN WITH NOTHING ELSE.	2.2	8	4	17881	1787	83.4	0.233	0.229		0.318	RANDOM	14.91

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]

Coordinate Error
Structure Solution Method	Refinement High Resolution	Refinement Low Resolution
		3229

RMS Deviations
Key	Refinement Restraint Deviation
s_similar_adp_cmpnt	0.077
s_non_zero_chiral_vol	0.04
s_angle_d	0.018
s_anti_bump_dis_restr	0.01
s_from_restr_planes	0.006
s_bond_d	0.003
s_similar_dist
s_zero_chiral_vol
s_rigid_bond_adp_cmpnt
s_approx_iso_adps

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms
Nucleic Acid Atoms	3036
Solvent Atoms	163
Heterogen Atoms	30

Software

Software
Software Name	Purpose
SHELXL-97	refinement
DENZO	data reduction
CNS	refinement
ADSC	data collection
EPMR	phasing

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.