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crystal structure of Sfi1p/Cdc31p complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 277 0.2 M sodium acetate, 18% PEG 3350, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 3.85 68.03
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.775 α = 90 b = 104.735 β = 90 c = 184.899 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2005-03-11 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9797, 0.9799, 0.9184 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 92.45 99.9 0.097 5.4 7.3 34711 34711 1.3 1.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3 3.16 100 0.47 1.6 7.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 3 92.45 1.3 34711 34711 1827 99.98 0.25522 0.25307 0.2739 0.29654 0.2994 RANDOM 70.434
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.42 2.64 -6.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.27 r_dihedral_angle_3_deg 18.569 r_dihedral_angle_4_deg 17.532 r_dihedral_angle_1_deg 4.591 r_scangle_it 1.657 r_scbond_it 1.151 r_angle_refined_deg 1.059 r_mcangle_it 0.66 r_mcbond_it 0.478 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.27 r_dihedral_angle_3_deg 18.569 r_dihedral_angle_4_deg 17.532 r_dihedral_angle_1_deg 4.591 r_scangle_it 1.657 r_scbond_it 1.151 r_angle_refined_deg 1.059 r_mcangle_it 0.66 r_mcbond_it 0.478 r_nbtor_refined 0.305 r_symmetry_hbond_refined 0.293 r_nbd_refined 0.202 r_xyhbond_nbd_refined 0.186 r_symmetry_vdw_refined 0.174 r_chiral_restr 0.076 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6122 Nucleic Acid Atoms Solvent Atoms 53 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SnB phasing SHARP phasing