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Crystal Structure of LpqW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.5 298 20-24% PEG 4000, 8-16% 2-propanol, 0.1M sodium citrate, 10mM DTT, pH 5.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 3.91 68.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 188.572 α = 90 b = 312.035 β = 90 c = 104.145 γ = 90
Symmetry Space Group C 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2004-08-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-C APS 14-BM-C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 158.11 97.1 0.081 17.9 3.8 115857
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 93 0.577 2.1 3 10998
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2.4 100 112319 3473 96.61 0.21684 0.2159 0.247 RANDOM 59.308
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.83 3.43 -0.61
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.738 r_dihedral_angle_4_deg 17.728 r_dihedral_angle_3_deg 13.212 r_dihedral_angle_1_deg 4.999 r_scangle_it 3.246 r_scbond_it 2.092 r_mcangle_it 1.354 r_angle_refined_deg 1.037 r_mcbond_it 0.736 r_nbtor_refined 0.298
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.738 r_dihedral_angle_4_deg 17.728 r_dihedral_angle_3_deg 13.212 r_dihedral_angle_1_deg 4.999 r_scangle_it 3.246 r_scbond_it 2.092 r_mcangle_it 1.354 r_angle_refined_deg 1.037 r_mcbond_it 0.736 r_nbtor_refined 0.298 r_symmetry_vdw_refined 0.201 r_symmetry_hbond_refined 0.19 r_nbd_refined 0.182 r_xyhbond_nbd_refined 0.122 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11479 Nucleic Acid Atoms Solvent Atoms 536 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection DENZO data reduction SCALEPACK data scaling MLPHARE phasing DM phasing