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Crystal structure of a protein of unknown function from duf1488 family (shew_3726) from shewanella loihica pv-4 at 1.60 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 4.6 277 2.0M (NH4)2SO4, 0.1M Acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.74 55.19
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.03 α = 90 b = 83.25 β = 90 c = 58.28 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 325 mm CCD Flat collimating mirror, toroid focusing mirror 2006-03-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SSRL BEAMLINE BL9-2 0.91837, 0.97925, 0.97858 SSRL BL9-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 29.14 93 0.056 11.37 15507 22.412
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 87.7 0.339 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.6 29.14 15490 778 98.14 0.152 0.151 0.1593 0.172 0.1855 RANDOM 13.613
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.53 0.43 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.422 r_dihedral_angle_3_deg 12.112 r_dihedral_angle_4_deg 8.238 r_scangle_it 8.154 r_dihedral_angle_1_deg 6.249 r_scbond_it 5.327 r_mcangle_it 3.213 r_mcbond_it 2.499 r_angle_refined_deg 1.538 r_angle_other_deg 0.955
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.422 r_dihedral_angle_3_deg 12.112 r_dihedral_angle_4_deg 8.238 r_scangle_it 8.154 r_dihedral_angle_1_deg 6.249 r_scbond_it 5.327 r_mcangle_it 3.213 r_mcbond_it 2.499 r_angle_refined_deg 1.538 r_angle_other_deg 0.955 r_mcbond_other 0.523 r_symmetry_vdw_refined 0.287 r_symmetry_vdw_other 0.226 r_nbd_refined 0.224 r_symmetry_hbond_refined 0.205 r_xyhbond_nbd_refined 0.192 r_nbd_other 0.184 r_nbtor_refined 0.175 r_chiral_restr 0.092 r_nbtor_other 0.084 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 733 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHELXD phasing autoSHARP phasing