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The beta-propeller domain of the Trilobed protease from Pyrococcus furiosus reveals an open velcro topology
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.4 273 100 mM sodium acetate pH 4.4, 20 mM MgCl2, 300 mM 1,6-hexanediol, 10 % PEG 4000, VAPOR DIFFUSION, HANGING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.27 45.76
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 54.747 α = 90 b = 88.504 β = 90 c = 153.966 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MAR CCD 165 mm 2004-10-10 M SINGLE WAVELENGTH 2 1 100 CCD ADSC QUANTUM 4 2004-12-10
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.00, 1.10, 1.03 MPG/DESY, HAMBURG BW6 2 SYNCHROTRON ESRF BEAMLINE ID14-1 1.07 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 18.72 100 39936 39936
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.107 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 2 18.72 39936 39936 1235 100 0.21014 0.21014 0.2087 0.2231 0.25824 RANDOM 45.852
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.131 r_dihedral_angle_3_deg 15.637 r_dihedral_angle_4_deg 14.486 r_dihedral_angle_1_deg 7.149 r_scangle_it 3.388 r_scbond_it 2.454 r_mcangle_it 2.34 r_mcbond_it 1.987 r_angle_refined_deg 1.134 r_angle_other_deg 0.825
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.131 r_dihedral_angle_3_deg 15.637 r_dihedral_angle_4_deg 14.486 r_dihedral_angle_1_deg 7.149 r_scangle_it 3.388 r_scbond_it 2.454 r_mcangle_it 2.34 r_mcbond_it 1.987 r_angle_refined_deg 1.134 r_angle_other_deg 0.825 r_mcbond_other 0.387 r_symmetry_vdw_refined 0.206 r_symmetry_hbond_refined 0.194 r_nbd_other 0.185 r_nbd_refined 0.18 r_nbtor_refined 0.179 r_symmetry_vdw_other 0.16 r_chiral_restr 0.133 r_xyhbond_nbd_refined 0.12 r_nbtor_other 0.081 r_bond_refined_d 0.008 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5198 Nucleic Acid Atoms Solvent Atoms 242 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection MOSFLM data reduction SOLVE phasing