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Crystal structure of Efb-C from Staphylococcus aureus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 3M Sodium Acetate pH 7.4 , VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 2.81 56.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 59.598 α = 90 b = 59.598 β = 90 c = 45.634 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARMOSAIC 300 mm CCD mirrors 2005-08-12 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 0.97949, 0.97934, 0.97178 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 50 86.9 0.063 0.071 16.7 3.6 44291 2 2 22.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.24 99.2 0.544 0.492 2.2 3.4 5029
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.25 59.55 2 44291 42060 2231 99.79 0.211 0.21095 0.21058 0.2029 0.21804 0.21 RANDOM 18.993
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 -0.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.744 r_dihedral_angle_4_deg 24.205 r_dihedral_angle_3_deg 10.568 r_dihedral_angle_1_deg 3.901 r_scangle_it 3.134 r_scbond_it 2.049 r_mcangle_it 1.202 r_angle_refined_deg 0.928 r_mcbond_it 0.748 r_symmetry_hbond_refined 0.365
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.744 r_dihedral_angle_4_deg 24.205 r_dihedral_angle_3_deg 10.568 r_dihedral_angle_1_deg 3.901 r_scangle_it 3.134 r_scbond_it 2.049 r_mcangle_it 1.202 r_angle_refined_deg 0.928 r_mcbond_it 0.748 r_symmetry_hbond_refined 0.365 r_nbtor_refined 0.296 r_nbd_refined 0.206 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.131 r_chiral_restr 0.064 r_bond_refined_d 0.006 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 987 Nucleic Acid Atoms Solvent Atoms 155 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction HKL-2000 data scaling SOLVE phasing