☰ Navigation Tabs
RNA Recognition and Cleavage by an Splicing Endonuclease
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 303 VAPOR DIFFUSION, HANGING DROP, PH 6.5, 303K, 0.12M AMMONIUM ACETATE, 35mM MAGNESIUM ACETATE, 50mM SODIUM CACODYLATE,10% ISOPROPANOL
Crystal Properties Matthews coefficient Solvent content 2.83 56.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 90.073 α = 90 b = 140.357 β = 111.69 c = 82.048 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 8-BM 1.0332 APS 8-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.85 35.09 90.2 0.11 45000 40048 5 5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.85 2.92 100 0.608
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.85 35.09 40048 32074 1689 83.94 0.24986 0.24736 0.29646 0.2823 RANDOM 64.292
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.5 -0.72 2.49 -2.52
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.969 r_dihedral_angle_3_deg 20.939 r_dihedral_angle_4_deg 15.588 r_dihedral_angle_1_deg 6.35 r_scangle_it 4.98 r_mcangle_it 4.465 r_scbond_it 3.094 r_mcbond_it 2.336 r_angle_refined_deg 1.831 r_nbtor_refined 0.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.969 r_dihedral_angle_3_deg 20.939 r_dihedral_angle_4_deg 15.588 r_dihedral_angle_1_deg 6.35 r_scangle_it 4.98 r_mcangle_it 4.465 r_scbond_it 3.094 r_mcbond_it 2.336 r_angle_refined_deg 1.831 r_nbtor_refined 0.319 r_symmetry_vdw_refined 0.31 r_nbd_refined 0.234 r_xyhbond_nbd_refined 0.18 r_symmetry_hbond_refined 0.151 r_chiral_restr 0.113 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10186 Nucleic Acid Atoms 1592 Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement ADSC data collection HKL-2000 data scaling AMoRE phasing