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Conformational mobility in the active site of a heme peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 273 0.1 M HEPES, pH 8.3, 2.25 M Lithium Sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.17 43.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.874 α = 90 b = 80.874 β = 90 c = 75.252 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.999 14.86 95.22 0.052 3.7 15798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.999 2.07 95.7 2.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.999 14.86 15796 840 95.55 0.19013 0.18782 0.1826 0.2355 0.2312 RANDOM 33.114
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.04 -0.04 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.141 r_dihedral_angle_4_deg 25.176 r_dihedral_angle_3_deg 15.713 r_dihedral_angle_1_deg 5.977 r_scangle_it 3.26 r_scbond_it 2.111 r_mcangle_it 1.789 r_angle_refined_deg 1.29 r_mcbond_it 0.979 r_symmetry_vdw_refined 0.345
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.141 r_dihedral_angle_4_deg 25.176 r_dihedral_angle_3_deg 15.713 r_dihedral_angle_1_deg 5.977 r_scangle_it 3.26 r_scbond_it 2.111 r_mcangle_it 1.789 r_angle_refined_deg 1.29 r_mcbond_it 0.979 r_symmetry_vdw_refined 0.345 r_symmetry_hbond_refined 0.336 r_nbtor_refined 0.303 r_nbd_refined 0.228 r_xyhbond_nbd_refined 0.203 r_metal_ion_refined 0.161 r_chiral_restr 0.08 r_bond_refined_d 0.012 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1910 Nucleic Acid Atoms Solvent Atoms 232 Heterogen Atoms 46
Software Software Software Name Purpose ADSC data collection HKL-2000 data reduction REFMAC refinement HKL-2000 data scaling