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Conformational mobility in the active site of a heme peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 273 0.1 M HEPES, pH 8.3, 2.25 M Lithium Sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.23 44.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.003 α = 90 b = 82.003 β = 90 c = 75.012 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2006-01-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 28.99 99.8 0.059 30.6 13.7 26381
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 100 11.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.75 27.05 26381 25006 1332 99.78 0.18167 0.17972 0.1785 0.22034 0.2211 RANDOM 20.103
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -0.03 0.06
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.121 r_dihedral_angle_4_deg 20.913 r_dihedral_angle_3_deg 13.471 r_dihedral_angle_1_deg 5.086 r_sphericity_free 3.829 r_scangle_it 3.508 r_sphericity_bonded 2.898 r_scbond_it 2.648 r_rigid_bond_restr 2.118 r_mcangle_it 1.504
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.121 r_dihedral_angle_4_deg 20.913 r_dihedral_angle_3_deg 13.471 r_dihedral_angle_1_deg 5.086 r_sphericity_free 3.829 r_scangle_it 3.508 r_sphericity_bonded 2.898 r_scbond_it 2.648 r_rigid_bond_restr 2.118 r_mcangle_it 1.504 r_angle_refined_deg 1.188 r_mcbond_it 0.886 r_nbtor_refined 0.308 r_xyhbond_nbd_refined 0.305 r_symmetry_vdw_refined 0.239 r_nbd_refined 0.21 r_symmetry_hbond_refined 0.19 r_chiral_restr 0.079 r_bond_refined_d 0.011 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1902 Nucleic Acid Atoms Solvent Atoms 223 Heterogen Atoms 44
Software Software Software Name Purpose ADSC data collection MOSFLM data reduction REFMAC refinement