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Conformational mobility in the active site of a heme peroxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.3 273 0.1 M HEPES, pH 8.3, 2.25 M Lithium Sulphate, VAPOR DIFFUSION, SITTING DROP, temperature 273K
Crystal Properties Matthews coefficient Solvent content 2.27 45.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.293 α = 90 b = 82.293 β = 90 c = 75.666 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-11-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.9998 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 36.81 92.8 0.052 4.7 52940
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.436 96.6 0.088
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.4 36.81 48714 48714 2622 99.36 0.20701 0.20581 0.1985 0.22949 0.2282 RANDOM 16.744
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_dihedral_angle_4_deg 19.516 r_dihedral_angle_3_deg 12.703 r_dihedral_angle_1_deg 4.761 r_scangle_it 2.854 r_sphericity_bonded 2.794 r_sphericity_free 2.543 r_scbond_it 1.941 r_mcangle_it 1.357 r_angle_refined_deg 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.007 r_dihedral_angle_4_deg 19.516 r_dihedral_angle_3_deg 12.703 r_dihedral_angle_1_deg 4.761 r_scangle_it 2.854 r_sphericity_bonded 2.794 r_sphericity_free 2.543 r_scbond_it 1.941 r_mcangle_it 1.357 r_angle_refined_deg 1.11 r_rigid_bond_restr 1.074 r_mcbond_it 0.858 r_nbtor_refined 0.304 r_symmetry_vdw_refined 0.225 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.189 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1896 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 50
Software Software Software Name Purpose ADSC data collection MOSFLM data reduction REFMAC refinement