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P38 Kinase Crystal Structure in complex with RO3201195
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.6 293 50mM HEPES pH 7.6, 50mM CaCl2, 17% PEG 3350, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.84 56.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.292 α = 90 b = 86.48 β = 90 c = 124.055 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.1 1.00 ALS 5.0.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 30 89.4 0.045 17.7 4.1 49862 44701
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 55.9 0.34 1.96 1.8 2763
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.752 30 44591 2231 89.44 0.206 0.205 0.2122 0.239 0.2469 RANDOM 23.859
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.4 0.27 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.045 r_dihedral_angle_4_deg 19.892 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 5.477 r_scangle_it 2.264 r_scbond_it 1.546 r_angle_refined_deg 1.232 r_mcangle_it 1.103 r_mcbond_it 0.992 r_angle_other_deg 0.741
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.045 r_dihedral_angle_4_deg 19.892 r_dihedral_angle_3_deg 11.926 r_dihedral_angle_1_deg 5.477 r_scangle_it 2.264 r_scbond_it 1.546 r_angle_refined_deg 1.232 r_mcangle_it 1.103 r_mcbond_it 0.992 r_angle_other_deg 0.741 r_symmetry_vdw_other 0.209 r_nbd_refined 0.208 r_nbtor_refined 0.175 r_nbd_other 0.167 r_mcbond_other 0.135 r_xyhbond_nbd_refined 0.118 r_symmetry_hbond_refined 0.113 r_nbtor_other 0.08 r_symmetry_vdw_refined 0.071 r_chiral_restr 0.064 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2798 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 27
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement