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Crystal Structure of Yersinia pestis LsrG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 295 20% PEG 6K, 100 mM MES, 0.17 M ammonium sulfate 100 microliter reservoir, 800 nanoliter drop,intelliplate, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 1.89 34.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.174 α = 90 b = 56.174 β = 90 c = 119.397 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 70 CCD ADSC QUANTUM 315 2005-07-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.2 0.97910, 0.97951, 0.97444 ALS 5.0.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 50 99.3 0.077 11.4 8.5 20024 20024 29.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.75 1.81 98.9 0.68 0.68 1.9 6.4 1949
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.75 20 19884 18868 1016 99.37 0.20022 0.20022 0.19728 0.1974 0.25829 0.2603 RANDOM 30.581
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.04 0.04 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 18.842 r_dihedral_angle_3_deg 13.719 r_dihedral_angle_1_deg 5.497 r_scangle_it 4.943 r_scbond_it 3.573 r_mcangle_it 2.05 r_angle_refined_deg 1.714 r_mcbond_it 1.234 r_nbtor_refined 0.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.983 r_dihedral_angle_4_deg 18.842 r_dihedral_angle_3_deg 13.719 r_dihedral_angle_1_deg 5.497 r_scangle_it 4.943 r_scbond_it 3.573 r_mcangle_it 2.05 r_angle_refined_deg 1.714 r_mcbond_it 1.234 r_nbtor_refined 0.31 r_symmetry_vdw_refined 0.233 r_nbd_refined 0.206 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.153 r_chiral_restr 0.123 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1593 Nucleic Acid Atoms Solvent Atoms 236 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement Blu-Ice data collection HKL-2000 data scaling SOLVE phasing