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Crystal Structure of the SH3 Domain of betaPIX in Complex with a High Affinity Peptide from PAK2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.5 293 0.1M HEPES, 53% MPD, 200mM [Co(NH3)]Cl3, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.41 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.377 α = 90 b = 31.427 β = 90 c = 28.171 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-09-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X9A 0.979191 NSLS X9A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.92 30 93.1 46091 46091
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 0.92 93.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 0.92 28.17 46091 40642 2160 92.94 0.185 0.18493 0.18419 0.1826 0.19896 0.1995 RANDOM 10.797
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.09 -0.25 0.16
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 12.32 r_dihedral_angle_3_deg 9.603 r_dihedral_angle_1_deg 5.655 r_sphericity_bonded 3.413 r_sphericity_free 2.454 r_scangle_it 1.939 r_scbond_it 1.789 r_rigid_bond_restr 1.443 r_mcangle_it 1.441
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.906 r_dihedral_angle_4_deg 12.32 r_dihedral_angle_3_deg 9.603 r_dihedral_angle_1_deg 5.655 r_sphericity_bonded 3.413 r_sphericity_free 2.454 r_scangle_it 1.939 r_scbond_it 1.789 r_rigid_bond_restr 1.443 r_mcangle_it 1.441 r_mcbond_it 1.191 r_angle_refined_deg 1.054 r_angle_other_deg 0.662 r_mcbond_other 0.488 r_symmetry_vdw_other 0.233 r_nbtor_refined 0.181 r_nbd_other 0.177 r_nbd_refined 0.169 r_symmetry_vdw_refined 0.137 r_symmetry_hbond_refined 0.12 r_xyhbond_nbd_refined 0.1 r_nbtor_other 0.081 r_chiral_restr 0.063 r_bond_refined_d 0.006 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 922 Nucleic Acid Atoms Solvent Atoms 309 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXS phasing