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beta appendage of AP2 complexed with ARH peptide
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1E42
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 18% PEG 8000, 100mM HEPES pH 7.5, 4mM DTT, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.17 43.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.75 α = 90 b = 36.313 β = 92.91 c = 98.982 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-05-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 1.03 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 49.45 0.076 19 5.4 35656 35656 10
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.69 0.689 3.1 3.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1E42 1.6 20 35493 35493 1781 99.24 0.216 0.216 0.215 0.2223 0.243 0.2507 RANDOM 23.967
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -1.28 1.82 -1.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.616 r_scangle_it 4.576 r_scbond_it 2.798 r_mcangle_it 1.965 r_angle_refined_deg 1.458 r_mcbond_it 1.072 r_angle_other_deg 0.804 r_symmetry_hbond_refined 0.753 r_symmetry_vdw_other 0.342 r_nbd_other 0.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.616 r_scangle_it 4.576 r_scbond_it 2.798 r_mcangle_it 1.965 r_angle_refined_deg 1.458 r_mcbond_it 1.072 r_angle_other_deg 0.804 r_symmetry_hbond_refined 0.753 r_symmetry_vdw_other 0.342 r_nbd_other 0.245 r_symmetry_vdw_refined 0.242 r_xyhbond_nbd_refined 0.217 r_nbd_refined 0.216 r_chiral_restr 0.093 r_nbtor_other 0.084 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1990 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms
Software Software Software Name Purpose SCALA data scaling AMoRE phasing REFMAC refinement PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling