☰ Navigation Tabs
CRYSTAL STRUCTURE OF A PUTATIVE SUGAR ISOMERASE (LMO2234) FROM LISTERIA MONOCYTOGENES AT 1.70 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 8 277 25.0% PEG-3350, 0.2M MAGNESIUM ACETATE, 0.1M TRIS, pH 8.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 1.99 37.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.832 α = 90 b = 61.249 β = 91.1 c = 70.428 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-12-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9999, 0.9797 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 28.894 98.8 0.098 0.098 6.8 3.5 58181
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.74 88.4 0.827 0.827 0.9 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 28.89 58148 2940 98.64 0.191 0.189 0.1969 0.238 0.2454 RANDOM 16.592
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.34 -0.75 -0.49 -0.87
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.328 r_dihedral_angle_4_deg 18.94 r_dihedral_angle_3_deg 14.562 r_dihedral_angle_1_deg 5.957 r_scangle_it 5.524 r_scbond_it 4.323 r_mcangle_it 2.337 r_mcbond_it 1.657 r_angle_refined_deg 1.64 r_angle_other_deg 0.884
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.328 r_dihedral_angle_4_deg 18.94 r_dihedral_angle_3_deg 14.562 r_dihedral_angle_1_deg 5.957 r_scangle_it 5.524 r_scbond_it 4.323 r_mcangle_it 2.337 r_mcbond_it 1.657 r_angle_refined_deg 1.64 r_angle_other_deg 0.884 r_mcbond_other 0.333 r_symmetry_vdw_refined 0.236 r_symmetry_vdw_other 0.224 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.193 r_nbd_other 0.185 r_symmetry_hbond_refined 0.183 r_nbtor_refined 0.177 r_chiral_restr 0.092 r_nbtor_other 0.089 r_xyhbond_nbd_other 0.061 r_bond_refined_d 0.018 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4345 Nucleic Acid Atoms Solvent Atoms 484 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement SCALA data scaling PDB_EXTRACT data extraction MOSFLM data reduction CCP4 data scaling SHELX phasing autoSHARP phasing