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Crystal structure of rat carnitine palmitoyltransferase 2 in complex with antidiabetic drug ST1326
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 294 25% (v/v) PEG 1500, microbatch, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.48 64.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.8 α = 90 b = 96.2 β = 90 c = 124.3 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-03-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.008 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 76.03 0.134 11.71 35312 33845
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.63 91.97 0.31 4.19
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 15 32831 1764 95.83 0.24412 0.24124 0.2428 0.29647 0.2952 RANDOM 40.988
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.8 -0.97 -5.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.791 r_dihedral_angle_4_deg 21.904 r_dihedral_angle_3_deg 18.882 r_dihedral_angle_1_deg 6.761 r_scangle_it 2.497 r_scbond_it 1.571 r_angle_refined_deg 1.502 r_mcangle_it 1.157 r_mcbond_it 0.645 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.791 r_dihedral_angle_4_deg 21.904 r_dihedral_angle_3_deg 18.882 r_dihedral_angle_1_deg 6.761 r_scangle_it 2.497 r_scbond_it 1.571 r_angle_refined_deg 1.502 r_mcangle_it 1.157 r_mcbond_it 0.645 r_nbtor_refined 0.309 r_nbd_refined 0.228 r_symmetry_vdw_refined 0.222 r_xyhbond_nbd_refined 0.187 r_symmetry_hbond_refined 0.126 r_chiral_restr 0.1 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4963 Nucleic Acid Atoms Solvent Atoms 152 Heterogen Atoms 28
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling AMoRE phasing