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CRYSTAL STRUCTURE OF A PUTATIVE FMN-BINDING PROTEIN (TA1372) FROM THERMOPLASMA ACIDOPHILUM AT 1.80 A RESOLUTION
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP, NANODROP 5 277 10.0% PEG-6000, 0.1M Acetate, pH 5.0, VAPOR DIFFUSION, SITTING DROP, NANODROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.2 43.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.04 α = 90 b = 66.69 β = 90 c = 99.94 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-12-15 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 0.9797, 1.0000, 0.9796 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 29.26 92 0.085 0.085 7.38 1.91 38245
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 72.9 0.715 0.715 1.6 1.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.8 29.26 38187 1910 99.35 0.188 0.186 0.188 0.231 0.2333 RANDOM 23.249
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.25 -1.93 2.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.893 r_dihedral_angle_4_deg 18.115 r_dihedral_angle_3_deg 14.434 r_scangle_it 6.991 r_dihedral_angle_1_deg 6.056 r_scbond_it 5.376 r_mcangle_it 3.109 r_mcbond_it 2.383 r_angle_refined_deg 1.548 r_angle_other_deg 0.983
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.893 r_dihedral_angle_4_deg 18.115 r_dihedral_angle_3_deg 14.434 r_scangle_it 6.991 r_dihedral_angle_1_deg 6.056 r_scbond_it 5.376 r_mcangle_it 3.109 r_mcbond_it 2.383 r_angle_refined_deg 1.548 r_angle_other_deg 0.983 r_mcbond_other 0.617 r_symmetry_vdw_refined 0.335 r_symmetry_vdw_other 0.228 r_nbd_refined 0.207 r_nbd_other 0.195 r_nbtor_refined 0.182 r_xyhbond_nbd_refined 0.161 r_symmetry_hbond_refined 0.103 r_chiral_restr 0.093 r_nbtor_other 0.087 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2971 Nucleic Acid Atoms Solvent Atoms 272 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement XSCALE data scaling PDB_EXTRACT data extraction XDS data reduction SHARP phasing