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Crystal Structure of the Conserved Protein of Unknown Function ATU0111 from Agrobacterium tumefaciens str. C58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 295 0.1M Bis-tris, 0.2M Na(OAC), 30% PEG8K, pH 6.50, VAPOR DIFFUSION, HANGING DROP, temperature 295K
Crystal Properties Matthews coefficient Solvent content 2.01 38.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.926 α = 89.7 b = 35.603 β = 79.12 c = 51.189 γ = 69.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 MIRRORS 2005-12-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 21.88 92.6 0.099 18 4.7 39939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 75.6 0.235 6.5 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 21.88 35978 35978 3961 92.51 0.15843 0.15376 0.1511 0.20032 0.1979 RANDOM 19.048
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.21 0.22 -1.41 -0.74 0.48 0.91
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.457 r_sphericity_free 20.254 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_3_deg 12.651 r_sphericity_bonded 5.933 r_dihedral_angle_1_deg 5.387 r_scangle_it 3.714 r_scbond_it 2.676 r_rigid_bond_restr 1.92 r_mcangle_it 1.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.457 r_sphericity_free 20.254 r_dihedral_angle_4_deg 17.903 r_dihedral_angle_3_deg 12.651 r_sphericity_bonded 5.933 r_dihedral_angle_1_deg 5.387 r_scangle_it 3.714 r_scbond_it 2.676 r_rigid_bond_restr 1.92 r_mcangle_it 1.65 r_angle_refined_deg 1.293 r_mcbond_it 1.113 r_nbtor_refined 0.309 r_nbd_refined 0.241 r_symmetry_vdw_refined 0.217 r_xyhbond_nbd_refined 0.155 r_symmetry_hbond_refined 0.148 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1873 Nucleic Acid Atoms Solvent Atoms 335 Heterogen Atoms 8
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MLPHARE phasing SHELXD phasing