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Putative methyltransferase yhhF from Escherichia coli.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 291 0.2 M sodium tartrate, 20% PEG 3350
, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.49 50.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.504 α = 90 b = 96.912 β = 92.21 c = 193.961 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-08-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97956 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 38.76 97.5 0.077 26.2 6.6 80096 80096
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 76.8 0.623 1.89 4.2 5233
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD 2.05 38.76 79903 79903 3178 97.7 0.1836 0.1836 0.1833 0.1835 0.2169 0.1878 RANDOM 33.642
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.73 0.59 -0.24 -0.44
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.758 r_dihedral_angle_4_deg 19.923 r_dihedral_angle_3_deg 15.5 r_dihedral_angle_1_deg 6.679 r_scangle_it 3.35 r_scbond_it 2.217 r_angle_refined_deg 1.48 r_mcangle_it 1.443 r_mcbond_it 0.92 r_nbtor_refined 0.3
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.758 r_dihedral_angle_4_deg 19.923 r_dihedral_angle_3_deg 15.5 r_dihedral_angle_1_deg 6.679 r_scangle_it 3.35 r_scbond_it 2.217 r_angle_refined_deg 1.48 r_mcangle_it 1.443 r_mcbond_it 0.92 r_nbtor_refined 0.3 r_symmetry_vdw_refined 0.219 r_nbd_refined 0.208 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.14 r_chiral_restr 0.103 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8309 Nucleic Acid Atoms Solvent Atoms 390 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection SCALEPACK data scaling HKL-3000 phasing SHELXD phasing MLPHARE phasing DM phasing SOLVE phasing RESOLVE phasing