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Dengue Virus NS2B/NS3 Protease
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other INHOUSE (OBTAINED BY SAD-PHASING).
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 298 40% PEG 200, 100mM MES, pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 321K, pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.02 39.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.307 α = 90 b = 61.109 β = 90 c = 113.877 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH OSMIC 2005-08-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ENRAF-NONIUS FR571
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 43 99.2 0.063 12 3.1 34365 28.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.56 98.8 0.202 5.2 2.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT INHOUSE (OBTAINED BY SAD-PHASING). 1.5 40 32645 32645 1719 99.2 0.177 0.176 0.1772 0.209 0.2094 RANDOM 13.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.2 0.66 -0.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.18 r_dihedral_angle_3_deg 14.428 r_dihedral_angle_4_deg 14.026 r_dihedral_angle_1_deg 6.236 r_scangle_it 3.648 r_scbond_it 2.431 r_mcangle_it 1.705 r_angle_refined_deg 1.588 r_mcbond_it 1.1 r_nbtor_refined 0.317
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 27.18 r_dihedral_angle_3_deg 14.428 r_dihedral_angle_4_deg 14.026 r_dihedral_angle_1_deg 6.236 r_scangle_it 3.648 r_scbond_it 2.431 r_mcangle_it 1.705 r_angle_refined_deg 1.588 r_mcbond_it 1.1 r_nbtor_refined 0.317 r_symmetry_vdw_refined 0.243 r_xyhbond_nbd_refined 0.219 r_nbd_refined 0.203 r_symmetry_hbond_refined 0.176 r_chiral_restr 0.116 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1466 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 13
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling PHASER phasing