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The crystal structure of a hydrolase from Streptococcus pneumoniae TIGR4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 287 0.1M Bis0Tris, 0.05M CaCl2, 30% PEG550, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 3.11 60.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 71.417 α = 90 b = 71.417 β = 90 c = 104.79 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2002-11-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 59 99.76 0.046 27 3.6 48846 48700 2 2 12
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.45 93.8 0.364 2.38 2.8 5063
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 59 48846 48700 2605 99.76 0.1578 0.15714 0.1583 0.16992 0.154 RANDOM 11.952
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.12 -0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.556 r_dihedral_angle_3_deg 10.875 r_dihedral_angle_4_deg 8.481 r_dihedral_angle_1_deg 5.352 r_scangle_it 3.007 r_scbond_it 2.184 r_angle_refined_deg 1.171 r_mcangle_it 1.167 r_angle_other_deg 0.76 r_mcbond_it 0.756
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.556 r_dihedral_angle_3_deg 10.875 r_dihedral_angle_4_deg 8.481 r_dihedral_angle_1_deg 5.352 r_scangle_it 3.007 r_scbond_it 2.184 r_angle_refined_deg 1.171 r_mcangle_it 1.167 r_angle_other_deg 0.76 r_mcbond_it 0.756 r_nbd_refined 0.22 r_symmetry_vdw_other 0.213 r_nbtor_refined 0.183 r_nbd_other 0.163 r_mcbond_other 0.152 r_symmetry_hbond_refined 0.125 r_xyhbond_nbd_refined 0.122 r_nbtor_other 0.079 r_metal_ion_refined 0.073 r_chiral_restr 0.065 r_symmetry_vdw_refined 0.065 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1494 Nucleic Acid Atoms Solvent Atoms 450 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling