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The crystal structure of the conserved domain protein from Streptococcus pneumoniae TIGR4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 287 2.5 M NaCl, 0.1M Tris-HCl, 0.2M MgCl2, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 3.83 67.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.42 α = 90 b = 92.42 β = 90 c = 41.343 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9798 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 50 91.64 0.057 13.77 3 7362 6747 2 2 44
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.18 43.5 0.155 3.2 1.3 1572
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.1 46.23 7362 6747 319 91.64 0.20438 0.20281 0.2099 0.23627 0.2155 RANDOM 43.344
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.56 -0.28 -0.56 0.84
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.672 r_dihedral_angle_4_deg 22.807 r_dihedral_angle_3_deg 17.702 r_dihedral_angle_1_deg 4.811 r_scangle_it 2.62 r_scbond_it 1.706 r_angle_refined_deg 1.277 r_mcangle_it 0.968 r_angle_other_deg 0.854 r_mcbond_it 0.783
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.672 r_dihedral_angle_4_deg 22.807 r_dihedral_angle_3_deg 17.702 r_dihedral_angle_1_deg 4.811 r_scangle_it 2.62 r_scbond_it 1.706 r_angle_refined_deg 1.277 r_mcangle_it 0.968 r_angle_other_deg 0.854 r_mcbond_it 0.783 r_nbd_refined 0.192 r_nbd_other 0.178 r_symmetry_vdw_other 0.178 r_xyhbond_nbd_refined 0.169 r_nbtor_refined 0.159 r_symmetry_vdw_refined 0.155 r_mcbond_other 0.106 r_nbtor_other 0.083 r_chiral_restr 0.071 r_symmetry_hbond_refined 0.066 r_bond_refined_d 0.011 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 601 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling