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Crystal Structure of Putative Methylase from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 289 100mM HEPES pH 7.5, 25% PEG4000, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.15 42.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.73 α = 90 b = 61.431 β = 97.27 c = 70.579 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 28.84 96.3 0.091 15.5 7.6 46688 46453
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 76.3 0.184 10.8 5 3677
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 28.84 41767 41767 4667 96.27 0.18256 0.18256 0.17899 0.1777 0.21499 0.2134 RANDOM 14.346
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.51 0.41 -0.51 1.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.223 r_dihedral_angle_4_deg 21.597 r_dihedral_angle_3_deg 13.677 r_dihedral_angle_1_deg 5.389 r_scangle_it 3.574 r_scbond_it 2.349 r_mcangle_it 1.352 r_angle_refined_deg 1.265 r_mcbond_it 0.96 r_nbd_refined 0.198
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.223 r_dihedral_angle_4_deg 21.597 r_dihedral_angle_3_deg 13.677 r_dihedral_angle_1_deg 5.389 r_scangle_it 3.574 r_scbond_it 2.349 r_mcangle_it 1.352 r_angle_refined_deg 1.265 r_mcbond_it 0.96 r_nbd_refined 0.198 r_symmetry_vdw_refined 0.174 r_symmetry_hbond_refined 0.142 r_xyhbond_nbd_refined 0.13 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2847 Nucleic Acid Atoms Solvent Atoms 461 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data reduction HKL-2000 data scaling HKL-3000 phasing MLPHARE phasing RESOLVE phasing SHELXE model building SHELXD phasing