2FHG

Crystal Structure of Mycobacterial Tuberculosis Proteasome


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1Q5QPDB entry 1Q5Q

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.72938% PEG 6000, 50 mM sodium citrate, pH 5.7, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5150.97

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 173.327α = 90
b = 113.802β = 113.93
c = 200.133γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray77CCDADSC QUANTUM 42005-02-01MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.0NSLSX25

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.25080.30.05821.9868679140722
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.23.310.544

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1Q5Q3.235029140786867453779.580.2440.244480.243370.26611RANDOM99.863
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.580.42.13-4.38
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.506
r_dihedral_angle_4_deg20.527
r_dihedral_angle_3_deg17.57
r_dihedral_angle_1_deg4.555
r_angle_refined_deg1.161
r_symmetry_vdw_refined0.599
r_symmetry_hbond_refined0.556
r_nbtor_refined0.308
r_nbd_refined0.253
r_xyhbond_nbd_refined0.158
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg38.506
r_dihedral_angle_4_deg20.527
r_dihedral_angle_3_deg17.57
r_dihedral_angle_1_deg4.555
r_angle_refined_deg1.161
r_symmetry_vdw_refined0.599
r_symmetry_hbond_refined0.556
r_nbtor_refined0.308
r_nbd_refined0.253
r_xyhbond_nbd_refined0.158
r_chiral_restr0.07
r_bond_refined_d0.01
r_gen_planes_refined0.003
r_mcbond_it
r_mcangle_it
r_scbond_it
r_scangle_it
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms46620
Nucleic Acid Atoms
Solvent Atoms226
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
CBASSdata collection
SCALEPACKdata scaling
CNSphasing