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Crystal structure of Crb2 tandem tudor domains
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 295 0.1M HEPES-Na, 0.8M NaH2PO4, 0.8M KH2PO4, pH 7.50, VAPOR DIFFUSION, HANGING DROP, temperature 295.0K
Crystal Properties Matthews coefficient Solvent content 3.25 62.15
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 116.924 α = 90 b = 116.924 β = 90 c = 87.015 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE OSMIC VARIMAX 2005-08-08 M SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.9 0.19 35.4 13.3 25798
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 100 0.082 3.11 9.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 33 25798 1393 100 0.196 0.192 0.1964 0.256 0.1841 RANDOM 39.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.01 0.01 0.01 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.493 r_dihedral_angle_3_deg 22.164 r_dihedral_angle_4_deg 18.227 r_dihedral_angle_1_deg 14.17 r_scangle_it 5.95 r_scbond_it 4.134 r_angle_refined_deg 2.639 r_mcangle_it 2.502 r_mcbond_it 1.501 r_symmetry_hbond_refined 0.426
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.493 r_dihedral_angle_3_deg 22.164 r_dihedral_angle_4_deg 18.227 r_dihedral_angle_1_deg 14.17 r_scangle_it 5.95 r_scbond_it 4.134 r_angle_refined_deg 2.639 r_mcangle_it 2.502 r_mcbond_it 1.501 r_symmetry_hbond_refined 0.426 r_nbtor_refined 0.326 r_symmetry_vdw_refined 0.283 r_nbd_refined 0.279 r_chiral_restr 0.246 r_xyhbond_nbd_refined 0.238 r_bond_refined_d 0.029 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3491 Nucleic Acid Atoms Solvent Atoms 171 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing