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Structure of Human Ferritin L Chain
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FHA PDB ENTRY 2FHA
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 273 30% Jeffermine M-600, 0.05M Cesium Chloride, 0.1M Sodium Citrate, pH 5.0-6.0, VAPOR DIFFUSION, temperature 273K
Crystal Properties Matthews coefficient Solvent content 3.57 65.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 182.786 α = 90 b = 182.786 β = 90 c = 354.234 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2005-06-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.00 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 43.6 91.6 0.138 5.1 79092 29.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FHA 2.5 43.57 67385 3391 85.6 0.224 0.2174 0.267 0.2575 RANDOM 44.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -8.06 2.19 -8.06 16.12
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 19.8 c_scangle_it 3.08 c_mcangle_it 2.18 c_scbond_it 1.97 c_angle_deg 1.3 c_mcbond_it 1.27 c_improper_angle_d 0.76 c_bond_d 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11216 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 10
Software Software Software Name Purpose CNX refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing