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Crystal structure of ABC-ATPase H662A of the ABC-transporter HlyB in complex with ADP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MT0 PDB entry 1MT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 100 mM Tris, 10% PEG 6000, 5% MPD, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.13 42.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.156 α = 90 b = 34.77 β = 98.58 c = 38.1 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-01-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 99.2 0.062 26 12.2 24609 3.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 88.5 0.163 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1MT0 1.7 20 24609 1276 99.21 0.20683 0.20511 0.24033 0.2729 RANDOM 25.059
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.67 -1.87 -0.61 0.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.147 r_scangle_it 4.813 r_scbond_it 2.945 r_mcangle_it 2.08 r_angle_refined_deg 1.574 r_mcbond_it 1.117 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.142
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.147 r_scangle_it 4.813 r_scbond_it 2.945 r_mcangle_it 2.08 r_angle_refined_deg 1.574 r_mcbond_it 1.117 r_symmetry_hbond_refined 0.229 r_nbd_refined 0.216 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.142 r_chiral_restr 0.113 r_bond_refined_d 0.015 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1907 Nucleic Acid Atoms Solvent Atoms 243 Heterogen Atoms 35
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing