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The ABC-ATPase of the ABC-transporter HlyB in the ADP bound state
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MT0 PDB ENTRY 1MT0
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 277 100 mM Tris, 10% PEG 6000, 5% MPD, pH 8, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.12 41.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 180.37 α = 90 b = 34.837 β = 98.41 c = 37.82 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 1.05 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 90.5 10.9 26698 2.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.6 1.65 69.5 0.254 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MT0 1.6 20 2.1 26698 1423 90.46 0.1944 0.19231 0.2006 0.23107 0.2042 RANDOM 30.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.09 -0.18 -0.04 0.08
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.782 r_dihedral_angle_1_deg 5.319 r_scbond_it 3.64 r_mcangle_it 2.614 r_mcbond_it 1.498 r_angle_refined_deg 1.434 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.149
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 5.782 r_dihedral_angle_1_deg 5.319 r_scbond_it 3.64 r_mcangle_it 2.614 r_mcbond_it 1.498 r_angle_refined_deg 1.434 r_nbd_refined 0.211 r_symmetry_vdw_refined 0.202 r_symmetry_hbond_refined 0.173 r_xyhbond_nbd_refined 0.149 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1912 Nucleic Acid Atoms Solvent Atoms 176 Heterogen Atoms 27
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing