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P450CAM from Pseudomonas putida reconstituted with manganic protoporphyrin IX
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2FE6 PDB ENTRY 2FE6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.4 277 7.5 MG/ML P450, 25 MM POTASSIUM PHOSPHATE, 250 MM KCL, 50 MM TRIS, 13.5-15% PEG 8000, 50 MM DTE, pH 7.40, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.33 47.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.32 α = 90 b = 63.82 β = 90 c = 105.44 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH 2005-07-23 M SINGLE WAVELENGTH 2 1 x-ray M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.7 18 95.9 0.071 0.6 12.83 47213 26.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.7 1.8 91.5 0.366 0.31 3.89
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2FE6 1.7 17.59 47201 47201 2360 98.9 0.181 0.179 0.1794 0.225 0.2253 RANDOM 22.05
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.63 0.36 -1
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_3_deg 13.195 r_dihedral_angle_4_deg 12.061 r_dihedral_angle_1_deg 5.505 r_scangle_it 3.723 r_scbond_it 2.297 r_angle_refined_deg 1.427 r_mcangle_it 1.365 r_mcbond_it 0.728 r_nbtor_refined 0.309
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_3_deg 13.195 r_dihedral_angle_4_deg 12.061 r_dihedral_angle_1_deg 5.505 r_scangle_it 3.723 r_scbond_it 2.297 r_angle_refined_deg 1.427 r_mcangle_it 1.365 r_mcbond_it 0.728 r_nbtor_refined 0.309 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.193 r_metal_ion_refined 0.169 r_xyhbond_nbd_refined 0.165 r_symmetry_hbond_refined 0.157 r_chiral_restr 0.098 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3221 Nucleic Acid Atoms Solvent Atoms 487 Heterogen Atoms 44
Software Software Software Name Purpose REFMAC refinement CNS refinement XSCALE data scaling PDB_EXTRACT data extraction MAR345 data collection XDS data scaling CNS phasing