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SyrB2 with Fe(II), chloride, and alpha-ketoglutarate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 277.15 15% PEG 3350, 250 mM Na formate,
spermine tetra-HCl, n-decanoyl sucrose, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 277.15K
Crystal Properties Matthews coefficient Solvent content 2.26 45.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 57.15 α = 90 b = 89.6 β = 90 c = 124.89 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD NOIR-1 Rosenbaum-Rock monochromator #1 high-resolution double-crystal sagittal focusing, Rosenbaum-Rock monochromator #2 double crystal, Rosenbaum-Rock vertical focusing mirror 2005-02-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 4.2.2 1.1271 ALS 4.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 44.8 95.9 0.059 13.3 6.51 81779 81779
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 92.2 0.459 3.9 5.44 446
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.6 44.8 77713 77713 3867 91.11 0.176 0.176 0.175 0.1857 0.204 0.2107 RANDOM 14.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.252 r_dihedral_angle_3_deg 14.269 r_dihedral_angle_4_deg 13.463 r_dihedral_angle_1_deg 6.602 r_scangle_it 2.956 r_scbond_it 2.081 r_angle_refined_deg 1.407 r_angle_other_deg 1.306 r_mcangle_it 1.274 r_mcbond_it 1.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.252 r_dihedral_angle_3_deg 14.269 r_dihedral_angle_4_deg 13.463 r_dihedral_angle_1_deg 6.602 r_scangle_it 2.956 r_scbond_it 2.081 r_angle_refined_deg 1.407 r_angle_other_deg 1.306 r_mcangle_it 1.274 r_mcbond_it 1.11 r_symmetry_vdw_other 0.242 r_nbd_refined 0.21 r_nbd_other 0.193 r_mcbond_other 0.192 r_nbtor_refined 0.187 r_symmetry_vdw_refined 0.173 r_xyhbond_nbd_refined 0.136 r_symmetry_hbond_refined 0.115 r_chiral_restr 0.087 r_nbtor_other 0.087 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4818 Nucleic Acid Atoms Solvent Atoms 517 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction d*TREK data reduction d*TREK data scaling SHARP phasing