X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1XX1PDB code: 1XX1

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP112982.4 M trisodium citrate, pH 11, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5251.28

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 140.587α = 90
b = 140.587β = 90
c = 113.608γ = 120
Symmetry
Space GroupP 65

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2005-06-19MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONLNLS BEAMLINE D03B-MX11.478LNLSD03B-MX1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.8522.583.4790483860162
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.851.8983.3

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB code: 1XX11.85209048386016446783.470.2250.189590.187290.23398RANDOM24.157
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.660.330.66-1
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.645
r_dihedral_angle_4_deg16.231
r_dihedral_angle_3_deg14.406
r_dihedral_angle_1_deg6.23
r_scangle_it3.735
r_scbond_it2.674
r_mcangle_it1.661
r_angle_refined_deg1.34
r_mcbond_it1.038
r_nbtor_refined0.319
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.645
r_dihedral_angle_4_deg16.231
r_dihedral_angle_3_deg14.406
r_dihedral_angle_1_deg6.23
r_scangle_it3.735
r_scbond_it2.674
r_mcangle_it1.661
r_angle_refined_deg1.34
r_mcbond_it1.038
r_nbtor_refined0.319
r_nbd_refined0.217
r_metal_ion_refined0.217
r_symmetry_hbond_refined0.19
r_symmetry_vdw_refined0.183
r_xyhbond_nbd_refined0.143
r_chiral_restr0.087
r_bond_refined_d0.011
r_gen_planes_refined0.006
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms9076
Nucleic Acid Atoms
Solvent Atoms507
Heterogen Atoms49

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing