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Myosin V cargo binding domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.5 279 1.7 M Nacl, 6% PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 279K, pH 6.50
Crystal Properties Matthews coefficient Solvent content 3.23 61.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 50.78 α = 90 b = 72.673 β = 90 c = 167.982 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-03-27 M MAD 2 1 3 1 4 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 17-ID APS 17-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 20.82 97 0.106 8.9 5.46 28080 17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 98.5 0.532 4.1 4.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.25 12 28080 26672 1408 93.2 0.219 0.217 0.2231 0.25 0.2249 RANDOM 32.63
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.11 0.22 -1.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.253 r_dihedral_angle_4_deg 18.573 r_dihedral_angle_3_deg 18.079 r_dihedral_angle_1_deg 5.165 r_scangle_it 2.841 r_scbond_it 1.86 r_mcangle_it 1.42 r_angle_refined_deg 1.313 r_mcbond_it 1.233 r_angle_other_deg 0.822
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.253 r_dihedral_angle_4_deg 18.573 r_dihedral_angle_3_deg 18.079 r_dihedral_angle_1_deg 5.165 r_scangle_it 2.841 r_scbond_it 1.86 r_mcangle_it 1.42 r_angle_refined_deg 1.313 r_mcbond_it 1.233 r_angle_other_deg 0.822 r_nbd_refined 0.195 r_symmetry_vdw_other 0.193 r_nbtor_refined 0.183 r_xyhbond_nbd_refined 0.183 r_nbd_other 0.162 r_symmetry_hbond_refined 0.161 r_mcbond_other 0.154 r_symmetry_vdw_refined 0.091 r_nbtor_other 0.087 r_chiral_restr 0.081 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3162 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms
Software Software Software Name Purpose d*TREK data reduction SOLVE phasing REFMAC refinement d*TREK data scaling