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Crystal structure of the chromo domain of human MRG15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.9 277 14% PEG 3350, 0.2M potassium nitrate, pH 6.9, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.02 39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 109.48 α = 90 b = 80.313 β = 123.91 c = 81.285 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2005-07-14 M SINGLE WAVELENGTH 2 1 CCD ADSC QUANTUM 4 2005-07-14
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F2 0.9793 CHESS F2 2 SYNCHROTRON CHESS BEAMLINE F1 0.9124 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 50 99.8 29640 29581
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 99.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 50 29667 28095 1485 99.71 0.227 0.22697 0.22447 0.2286 0.2727 0.2738 RANDOM 52.674
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.1 -1.38 -1.04 -0.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.11 r_dihedral_angle_1_deg 3.739 r_scangle_it 3.457 r_sphericity_free 2.776 r_mcangle_it 2.701 r_scbond_it 2.174 r_sphericity_bonded 1.652 r_mcbond_it 1.528 r_angle_refined_deg 1.523 r_rigid_bond_restr 1.496
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 21.11 r_dihedral_angle_1_deg 3.739 r_scangle_it 3.457 r_sphericity_free 2.776 r_mcangle_it 2.701 r_scbond_it 2.174 r_sphericity_bonded 1.652 r_mcbond_it 1.528 r_angle_refined_deg 1.523 r_rigid_bond_restr 1.496 r_symmetry_vdw_refined 0.319 r_nbd_refined 0.287 r_xyhbond_nbd_refined 0.272 r_symmetry_hbond_refined 0.207 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.006 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4114 Nucleic Acid Atoms Solvent Atoms 457 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing