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Crystal structure of MRG domain from human MRG15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 293 20% PEG 4000, 0.1M HEPES, 5% iso-propanol, pH 7.8, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.44 49.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 111.151 α = 90 b = 111.151 β = 90 c = 86.991 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-03-10 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD ADSC QUANTUM 4 2004-03-10 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-6A 1.0000 Photon Factory BL-6A 2 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-18B 0.9782, 0.9819, 0.9875 Photon Factory BL-18B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 2.2 50 99 4.2 21311 20198
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.2 2.28 100 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2.2 50 21311 19177 1005 99.22 0.219 0.20653 0.20458 0.24323 0.2286 RANDOM 48.134
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.98 -0.99 -1.98 2.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.625 r_scangle_it 5.376 r_sphericity_free 3.358 r_scbond_it 3.296 r_mcangle_it 3.04 r_sphericity_bonded 1.961 r_rigid_bond_restr 1.861 r_mcbond_it 1.645 r_angle_refined_deg 1.54 r_nbd_refined 0.253
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.625 r_scangle_it 5.376 r_sphericity_free 3.358 r_scbond_it 3.296 r_mcangle_it 3.04 r_sphericity_bonded 1.961 r_rigid_bond_restr 1.861 r_mcbond_it 1.645 r_angle_refined_deg 1.54 r_nbd_refined 0.253 r_symmetry_vdw_refined 0.24 r_xyhbond_nbd_refined 0.224 r_symmetry_hbond_refined 0.21 r_chiral_restr 0.105 r_bond_refined_d 0.017 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2598 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing