☰ Navigation Tabs
alpha-spectrin SH3 domain A56G mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SHG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 288 2M Sodium Formiate, 0.1 M MES, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 288K
Crystal Properties Matthews coefficient Solvent content 1.586 22.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 23.932 α = 90 b = 41.617 β = 90 c = 45.981 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD BRUKER PROTEUM X8 Montel Optics 2005-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE BRUKER AXS MICROSTAR 1.54
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40 93.7 0.0273 0.0266 31.37 3.32 4251 3983
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.95 70.4 0.0792 0.0475 11.5 1.17 406
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1SHG 1.85 20 3983 3774 3774 180 93.79 0.17526 0.17526 0.17317 0.1756 0.22324 0.194 RANDOM 7.387
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.11 -0.22 0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.988 r_dihedral_angle_4_deg 18.132 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_1_deg 5.84 r_scangle_it 2.295 r_scbond_it 1.467 r_angle_refined_deg 1.248 r_mcangle_it 0.869 r_mcbond_it 0.557 r_nbtor_refined 0.306
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 42.988 r_dihedral_angle_4_deg 18.132 r_dihedral_angle_3_deg 14.533 r_dihedral_angle_1_deg 5.84 r_scangle_it 2.295 r_scbond_it 1.467 r_angle_refined_deg 1.248 r_mcangle_it 0.869 r_mcbond_it 0.557 r_nbtor_refined 0.306 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.217 r_xyhbond_nbd_refined 0.192 r_symmetry_vdw_refined 0.189 r_chiral_restr 0.082 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 507 Nucleic Acid Atoms Solvent Atoms 54 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SAINT data reduction SADABS data scaling MOLREP phasing