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Crystal Structure of PA1607, a Putative Transcription Factor
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8.6 298 10mg/ml protein, 0.1 M Tris, 0.2 M LiSO4, 28 % PEG 3350, pH 8.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.23 44.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 46.884 α = 90 b = 78.865 β = 91.64 c = 78.941 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2005-04-01 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97932, 0.97948 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 78 24599
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.85 35.27 21007 1130 90.03 0.18081 0.17697 0.25099 0.2864 RANDOM 36.558
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.12 -2.14 -1.83 -0.41
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.623 r_dihedral_angle_4_deg 15.385 r_dihedral_angle_3_deg 14.916 r_dihedral_angle_1_deg 6.987 r_scangle_it 4.013 r_scbond_it 2.965 r_mcangle_it 1.744 r_angle_refined_deg 1.696 r_mcbond_it 1.254 r_symmetry_hbond_refined 0.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.623 r_dihedral_angle_4_deg 15.385 r_dihedral_angle_3_deg 14.916 r_dihedral_angle_1_deg 6.987 r_scangle_it 4.013 r_scbond_it 2.965 r_mcangle_it 1.744 r_angle_refined_deg 1.696 r_mcbond_it 1.254 r_symmetry_hbond_refined 0.347 r_nbtor_refined 0.309 r_symmetry_vdw_refined 0.228 r_nbd_refined 0.224 r_xyhbond_nbd_refined 0.204 r_chiral_restr 0.119 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2215 Nucleic Acid Atoms Solvent Atoms 329 Heterogen Atoms 32
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing