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Structure of Rv1264N, the regulatory domain of the mycobacterial adenylyl cylcase Rv1264, at pH 5.3
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5.3 291 PEG 400, sodium acetate, calcium acetate, pH 5.3, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties Matthews coefficient Solvent content 2.1 41.9
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.403 α = 90 b = 52.976 β = 133.73 c = 89.399 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-03-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.934 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.68 45 99.7 0.077 6.4 5.7 11634 11593 90.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.68 2.82 99.7 0.36 1.9 3.6 1665
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.68 40 11634 11038 551 99.66 0.23084 0.23084 0.22927 0.235 0.26517 0.2668 RANDOM 79.249
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.77 5.3 -3.59 7.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.896 r_dihedral_angle_4_deg 16.042 r_dihedral_angle_3_deg 15.832 r_scangle_it 8.287 r_scbond_it 5.5 r_dihedral_angle_1_deg 4.422 r_angle_other_deg 3.269 r_mcangle_it 2.883 r_mcbond_it 2.474 r_angle_refined_deg 0.957
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.896 r_dihedral_angle_4_deg 16.042 r_dihedral_angle_3_deg 15.832 r_scangle_it 8.287 r_scbond_it 5.5 r_dihedral_angle_1_deg 4.422 r_angle_other_deg 3.269 r_mcangle_it 2.883 r_mcbond_it 2.474 r_angle_refined_deg 0.957 r_mcbond_other 0.503 r_symmetry_vdw_other 0.324 r_nbd_other 0.241 r_nbd_refined 0.186 r_symmetry_vdw_refined 0.178 r_nbtor_refined 0.154 r_xyhbond_nbd_refined 0.112 r_nbtor_other 0.098 r_chiral_restr 0.058 r_symmetry_hbond_refined 0.046 r_bond_refined_d 0.007 r_gen_planes_refined 0.002 r_gen_planes_other 0.001 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2819 Nucleic Acid Atoms Solvent Atoms 22 Heterogen Atoms 40
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing