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Crystal structure of the ankyrin repeat domain of the TRPV2
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 298 0.17mM protein, 1.2M lithium acetate, 0.1M MES, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.85 56.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.77 α = 90 b = 60.77 β = 90 c = 339.841 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD CUSTOM-MADE 2005-08-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9794 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 38 98.7 33854 33406 1 1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.28 97.6 0.101
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 31792 30005 3359 98.76 0.26 0.19465 0.18937 0.1921 0.24161 0.2438 RANDOM 35.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.27 0.27 -0.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.749 r_dihedral_angle_3_deg 17.519 r_dihedral_angle_4_deg 16.769 r_dihedral_angle_1_deg 5.62 r_scangle_it 3.302 r_scbond_it 2.131 r_angle_refined_deg 1.472 r_mcangle_it 1.319 r_mcbond_it 0.749 r_nbtor_refined 0.301
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.749 r_dihedral_angle_3_deg 17.519 r_dihedral_angle_4_deg 16.769 r_dihedral_angle_1_deg 5.62 r_scangle_it 3.302 r_scbond_it 2.131 r_angle_refined_deg 1.472 r_mcangle_it 1.319 r_mcbond_it 0.749 r_nbtor_refined 0.301 r_symmetry_hbond_refined 0.287 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.205 r_xyhbond_nbd_refined 0.157 r_chiral_restr 0.098 r_bond_refined_d 0.015 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3748 Nucleic Acid Atoms Solvent Atoms 277 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing