☰ Navigation Tabs
The crystal structure of PII protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2GW8 PDB ENTRY 2GW8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 5.3 291 Citrate, Ammonium sulfate , pH5.3, microbatch method , temperature 291K
Crystal Properties Matthews coefficient Solvent content 1.77 30.56
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.04 α = 90 b = 81.04 β = 90 c = 81.04 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RIGAKU JUPITER 210 MONOCHROMATOR 2006-09-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL26B2 1.0 SPring-8 BL26B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 99.9 0.039 0.039 81.25 21.2 8368 -3 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 100 0.232 0.232 14.91 21.8 812
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 2GW8 1.8 40.52 8258 451 98.6 0.185 0.185 0.223 0.2257 RANDOM 25.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.6 c_scangle_it 4.99 c_scbond_it 3.5 c_mcangle_it 2.89 c_mcbond_it 1.98 c_angle_deg 1.5 c_improper_angle_d 0.8 c_bond_d 0.009 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 24.6 c_scangle_it 4.99 c_scbond_it 3.5 c_mcangle_it 2.89 c_mcbond_it 1.98 c_angle_deg 1.5 c_improper_angle_d 0.8 c_bond_d 0.009 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 740 Nucleic Acid Atoms Solvent Atoms 82 Heterogen Atoms 11
Software Software Software Name Purpose CNS refinement HKL-2000 data reduction HKL-2000 data scaling MOLREP phasing