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Solution structure of the N-teruminus extended RhoGAP domain from human Rho GTPase activating protein 5 variant
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 3D_13C-separated_NOESY 1.31mM RhoGAP domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 296 2 3D_15N-separated_NOESY 1.31mM RhoGAP domain U-15N, 13C; 20mM d-Tris-HCl(pH 7.0); 100mM NaCl; 1mM d-DTT; 0.02% NaN3; 90% H2O, 10% D2O 90% H2O/10% D2O 120mM 7.0 ambient 296
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 900 2 Bruker AVANCE II 900
NMR Refinement Method Details Software torsion angle dynamics, restrainted molecular dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria structures with the least restraint violations, structures with the lowest energy, target function Conformers Calculated Total Number 100 Conformers Submitted Total Number 20 Representative Model 1 (lowest energy)
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 3.5 Bruker 2 collection TopSpin 1.3 Bruker 3 processing NMRPipe 20060524 Delaglio, F. 4 data analysis NMRView 5.0.4 Johnson, B.A. 5 data analysis KUJIRA 0.9823 Kobayashi, N. 6 structure solution CYANA 2.0.17 Guntert, P. 7 refinement CYANA 2.0.17 Guntert, P.