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Crystal structure of the NO-bound form of Arthromyces ramosus peroxidase at 1.3 Angstroms resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICRODIALYSIS 7.5 297 37% saturated ammonium sulfate, Tris-HCl, pH 7.5, MICRODIALYSIS, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.2 45.06
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.77 α = 90 b = 73.77 β = 90 c = 115.8 γ = 90
Symmetry Space Group P 42 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2001-05-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL41XU 0.71 SPring-8 BL41XU
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 98.3 0.066 0.066 3.2 7.7 78980 78980
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.3 1.37 92.9 0.264 0.264 0.8 6.3 10689
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS FREE R 1.3 10 73645 73645 3892 0.1528 0.1528 0.148 0.1447 0.2005 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 6 1515 2952.14
RMS Deviations Key Refinement Restraint Deviation s_approx_iso_adps 0.07 s_non_zero_chiral_vol 0.069 s_zero_chiral_vol 0.067 s_similar_adp_cmpnt 0.042 s_from_restr_planes 0.0294 s_angle_d 0.028 s_anti_bump_dis_restr 0.025 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.004 s_similar_dist
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2465 Nucleic Acid Atoms Solvent Atoms 403 Heterogen Atoms 86
Software Software Software Name Purpose SCALA data scaling SHELX refinement PDB_EXTRACT data extraction MAR345 data collection MOSFLM data reduction CCP4 data scaling X-PLOR phasing SHELXL-97 refinement