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Co-crystal Structure Analysis of GGA1-GAE with the WNSF motif
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1IU1 PDBENTRY 1IU1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG3350, DI-AMMONIUM TARTRATE, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.64 53.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.22 α = 90 b = 69.62 β = 90 c = 184.967 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2003-04-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE AR-NW12A Photon Factory AR-NW12A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.55 50 99.7 0.065 13.1 3.9 20904
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.55 2.64 99.2 0.345
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDBENTRY 1IU1 2.55 38.63 19211 1041 96.9 0.241 0.238 0.2416 0.287 0.2597 RANDOM 44.37
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 0.04 -0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.163 r_scangle_it 3.12 r_mcangle_it 1.929 r_scbond_it 1.811 r_angle_refined_deg 1.779 r_mcbond_it 1.046 r_angle_other_deg 0.939 r_symmetry_vdw_other 0.287 r_nbd_other 0.247 r_symmetry_vdw_refined 0.245
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.163 r_scangle_it 3.12 r_mcangle_it 1.929 r_scbond_it 1.811 r_angle_refined_deg 1.779 r_mcbond_it 1.046 r_angle_other_deg 0.939 r_symmetry_vdw_other 0.287 r_nbd_other 0.247 r_symmetry_vdw_refined 0.245 r_nbd_refined 0.232 r_xyhbond_nbd_refined 0.17 r_chiral_restr 0.101 r_nbtor_other 0.09 r_symmetry_hbond_refined 0.05 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4113 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms
Software Software Software Name Purpose MOLREP phasing REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling